species:   Bodot
pid:       PID1095
parent:    Bd-milR44
paralog:   
locus:     MU009149.1:3025281-3025568
matures:   ['UUCGAUCCCGGGUUGGCGCUU', 'GCGCCAACCCAGGAUCGAACU']
srr:       SRR8374849
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374849.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374849.cram MU009149.1:3025281-3025568

5 out of bounds
157 alignments
39 proper strand
28 stranded perfect matches

           ***********************                                                                                                                                                                                                                             ***********************          
GGACAAAAGAGAAGCGCCAACCCAGGAUCGAACUGGGGACCUCGGGAUGACUGCAAUUUAACUGCAAUCCUACGCUCUACCGCUGAGCUAUUGACGCUUGCUUCAACUUGGUUAUUGUUGAAAAACAGUGUUGCGAAAUAAUAUUAUAUUUUGGGGGGGUAGCUUCUGGAAAGCUUAGAGUCGGACAGUGAAAGAAUAUCCUGAAAAGAACAAGUGCGGGACUGGAAGUUGACUAGCAGUCAUCCCGAUGUCCUUAGUUCGAUCCCGGGUUGGCGCUUCUCUUUUGUC
.((((((((((((((((((((((.((((((((((((((((.(((((((((((((...((((((.((.((((.((((...((((((((((...((((((...((((((.........))))))....)))))).(((((((......)))))))(((((....)))))....)))))))...))).(((.((.......))))).........)))).)))).))..))))))...))))))))))))).)))))))))))))))).))))))))))))))))))))))
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUU---------- l=21 a=22 c
-------------GCGCCAACCCAGGAUCGAACU-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUU---------- l=21 a=22 ma
-------------GCGCCAACCCAGGAUCGAACU-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 ma*

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCGAUCCCGGGUUGGCGCUcC--------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCG------------- l=18 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGC------------ l=19 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cUCGAUCCCGGGUUGGCGCU----------- l=20 a=4 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCU----------- l=20 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUc---------- l=21 a=4 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUU---------- l=21 a=22 (c,ma)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCuCGGGUUGGCGCUU---------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUUC--------- l=22 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUUu--------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUCGAUCCCGGGUUGGCGCUUCUC------- l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-101110011100
fn-101
